Read Stripping Down Science Online
Authors: Chris Smith,Dr Christorpher Smith
Bacteria don't generally have a taste for sushi, but they do degrade seaweeds, so Michel searched the international DNA databases looking to see whether any related genes had been found by other scientists elsewhere. Incredibly, similar gene sequences had been seen before â but not where anyone was expecting: the results he turned up were from bacterial samples collected from human intestines. In this case the organism harbouring them was part of the normal human flora and known as
Bacteroides plebeius
.
More intriguing was that the samples in which these bacteria had been identified were all from Japanese people â the genes appeared to be missing amongst the microbes living in the guts of people in America. This
suggests that the Japanese liking for seaweed (the average daily consumption is 14.2 grams per person) has at some point carried the DNA from a marine bacterium with seaweed-digesting genetic know-how, into the guts of a sushi-eater (or similar), whereupon the resident bacterial flora have grabbed the genes and incorporated them into their own metabolic repertoires.
In this way, the bugs have equipped themselves with the chemical equivalent of a sharper knife and fork to help them to deal with a tough new foodstuff. As Stanford scientist Justin Sonnenburg, commenting on the research, puts it, âNext time you take a bite of an unfamiliar food, think about the microbial inhabitants you may be ingesting, and the possibility that you will be providing one of your 10 trillion closest friends with a new set of utensils â¦'
FOOTNOTES
1
Science
5 October 2007: Vol. 318. no. 5847, p. 70 DOI: 10.1126/science.1145147
2
Current Biology
6 August 2009: Vol. 19. no. 16, pp. 1368â 72 DOI: 10.1016/j.cub.2009.06.067
3
Cochrane Database of Systematic Reviews
2008: Vol. 2. DOI: 10.1002/14651858.CD007176
4
PLoS Medicine
8 January 2008: Vol. 5. no. 1, p. 12 DOI: 10.1371/journal.pmed.0050012
5
rnl.co.kr/eng/main.asp
6
www.viagen.com/en/our-services/preserving-your-pets/
7
Science
2 October 2009: Vol. 326. no. 5949, pp. 150â53 DOI: 10.1126/science.1177808
8
Current Biology
14 July 2009: Vol. 19. no. 13, R507â08 DOI: 10.1016/j.cub.2009.05.033
9
PNAS
13 October 2009: Vol. 106. no. 41, pp. 17290â95 DOI: 10.1073/pnas.0904491106
10
PNAS
13 January 2009: Vol. 106, no. 2, pp. 623â28 DOI: 10.1073/pnas.0810907106
11
Journal of Consumer Research
October 2008: Vol. 35. no. 3 DOI: 10.1086/589564
12
Physiology & Behavior
9 June 2008: Vol. 94, no. 3, pp. 454â62 DOI: 10.1016/j.physbeh.2008.02.011
13
Science
12 February 1993: Vol. 259, no. 5097, pp. 920â26 DOI: 10.1126/science.11536547
14
Nature
1 April 2010: Vol. 464, pp. 744â47 DOI: 10.1038/nature08955
15
Nature
17 September 2009: Vol. 461, pp. 381â84 DOI: 10.1038/nature08292
16
Science
6 March 2009: Vol. 323, no. 5919, pp. 1344â1347 DOI: 10.1126/science.1164033
17
Nature
28 June 2007: Vol. 447, pp. 1107â10 DOI: 10.1038/nature05912
18
Nature
22 December 2005: Vol. 438, pp. 1095â96 DOI: 10.1038/4381095a
19
Current Biology
23 March 2010: Vol. 20, no. 6, R280â82 DOI: 10.1016/j.cub.2010.02.008
20
PNAS
17 March 2009: Vol. 106, no. 11, pp. 4453â58 DOI: 10.1073/pnas.0808180106
21
Nature
23 July 2009: Vol. 460, pp. 515â19 DOI: 10.1038/nature08200
22
www.sciencemag.org/cgi/rapidpdf/science.1193748.pdf
DOI: 10.1126/science.1193748
23
Science
25 May 2007: Vol. 316, no. 5828, pp. 1178â81 DOI: 10.1126/science.1141040
24
New England Journal of Medicine
24 January 2008: Vol. 358, pp. 353â61
25
Nature
28 September 2005: Vol. 437, p. 635 DOI: 10.1038/437635a
26
JAMA
3 March 2010: Vol. 303, no. 9, pp. 841â48
27
JAMA
12 August 2009: Vol. 302, no. 6, pp. 649â58
28
Science
20 October 2006: Vol. 314, no. 5798, pp. 479â82 DOI: 10.1126/science.1127376
29
Nature
11 January 2007: Vol. 445, pp. 190â93 DOI: 10.1038/nature05425
30
en.wikipedia.org/wiki/Radium_Girls
31
Evolution and Human Behavior
November 2007: Vol. 28, no. 6, pp. 375â81 DOI: 10.1016/j.evolhumbehav.2007.06.002
32
Evolution and Human Behavior
July 2008: Vol. 29, no. 4, pp. 268â74 DOI: 10.1016/j.evolhumbehav.2008.02.001
33
Psychological Science
February 2010: Vol. 21, no. 2, pp. 276â83 DOI: 10.1177/0956797609357733
34
Nature
3 August 2006: Vol. 442, p. 525 DOI: 10.1038/442525a
35
Current Biology
14 May 2009: Vol. 19, no. 11, pp. 948â53 DOI: 10.1016/j.cub.2009.04.051
36
Nano Letters
February 2008: Vol. 8, no. 2, pp. 446â51 DOI: 10.1021/nl072369t
37
Nature
14 December 2006: Vol. 444, pp. 894â98 DOI: 10.1038/nature05413
38
PNAS
16 March 2010: Vol. 107, no. 11, pp. 5148â53 DOI: 10.1073/pnas.0913181107
39
As told to Dr Chris Smith.
40
American Journal of Human Genetics
5 March 2009: Vol. 84, no. 3, pp. 367â79 DOI: 10.1016/j.ajhg.2009.02.001
41
Applied Optics
10 December 1996: Vol. 35, no. 7, pp. 1151 DOI: 10.1364/AO.35.001151
42
Nature
30 November 2006: Vol. 444, p. 565 DOI: 10.1038/444565a
43
Nature
4 March 2010: Vol. 464, pp. 66â71 DOI: 10.1038/nature08834
44
Insect Molecular Biology
June 2010: Vol. 19, no. 3, pp. 391â98 DOI: 10.1111/j.1365-2583.2010.01000.x
45
PLoS Medicine
July 2009: Vol. 6, no. 7 DOI: 10.1371/journal.pmed.1000116
46
Science
29 February 2008: Vol. 319, no. 5867, p. 1214 DOI: 10.1126/science.1149757
47
Nature
25 March 2010: Vol. 464, pp. 549â53 DOI: 10.1038/nature08873
48
Nature
25 March 2010: Vol. 464, pp. 601â05 DOI: 10.1038/nature08804;
Nature
25 March 2010: Vol. 464, pp. 606â09 DOI: 10.1038/nature08899
49
Marine Biology
2005: Vol. 148, pp. 383â94 DOI: 10.1007/s00227-005-0085-3
50
Current Biology
11 February 2010: Vol. 20, no. 4, pp. 310â15 DOI: 10.1016/j.cub.2009.12.060
51
Frisch, Karl von (1967),
The Dance Language and Orientation of Bees
. Cambridge, Mass., The Belknap Press of Harvard University Press.
52
Plant Cell
July 2009: Vol. 21, no. 7, pp. 2163â78 DOI: 10.1105/tpc.108.064568
53
Archives of Neurology
June 1979: Vol. 36, no. 6, pp. 370â73;
Lancet
28 February 1976: Vol. 1, no. 7957, pp. 454â55
54
Science
24 July 2009: Vol. 325, no. 5939, pp. 468â70 DOI: 10.1126/science.1175553
55
Science
5 June 2009: Vol. 324, no. 5932, pp. 1318â20 DOI: 10.1126/science.1172227
56
Science
13 February 2009: Vol. 323, no. 5916, p. 896 DOI: 10.1126/science.1166664
57
Nature
15 May 2008: Vol. 453, pp. 387â90 DOI: 10.1038/nature06834
58
PNAS
9 September 2008: Vol. 105, no. 36, pp. 13451â55 DOI: 10.1073/pnas.0803650105
59
Nature
26 November 2009: Vol. 462, pp. 502â04 DOI: 10.1038/nature08572
60
Current Biology
5 November 2009: Vol. 19, no. 23, pp. 1994â97 DOI: 10.1016/j.cub.2009.09.064
61
Audiology & Neurotology
NovemberâDecember 2003: Vol. 8, no. 6, pp. 347â53 DOI: 10.1159/000073519
62
Early Human Development
June 2000: Vol. 58, no. 3, pp. 179â95 DOI: 10.1016/S0378-3782(00)00075-X
63
PNAS
17 February 2009: Vol. 106, no. 7, pp. 2464-67 DOI: 10.1073/pnas.0808798106
64
Brain, Behavior and Evolution
August 2007: Vol. 70, no. 2, pp. 90â104 DOI: 10.1159/000102971
65
Cell
17 April 2009: Vol. 137, no. 2, pp. 356â68 DOI: 10.1016/j.cell.2009.01.052
66
Quarterly Journal of Experimental Psychology
April 2008: Vol. 61, no. 4, pp. 535â42 DOI: 10.1080/17470210701728867
67
Nature
23 November 2006: Vol. 444, p. 438 DOI: 10.1038/444438a
68
Nature
20 March 2008: Vol. 452, pp. 352â55 DOI: 10.1038/nature06713
69
New England Journal of Medicine
18 February 2010: Vol. 362, pp. 579â89 DOI: 10.1056/NEJMoa0905370
70
Current Biology
13 August 2009: Vol. 19, no. 18, pp. 1543â48 DOI: 10.1016/j.cub.2009.07.051
71
Science
30 April 2010: Vol. 328, no. 5978, pp. 611â13 DOI: 10.1126/science.1182274
72
Nature
11 June 2009: Vol. 459, pp. 833â36 DOI: 10.1038/nature08042
73
Journal of Zoology
August 2010: Vol. 281, no. 4, pp. 263â71 DOI: 10.1111/j.1469-7998.2010.00700.x
74
Science
7 November 2008: Vol. 322, no. 5903, pp. 900â04 DOI: 10.1126/science.1158668
75
Nature
26 February 2009: Vol. 457, pp. 1109â11 DOI: 10.1038/nature07778
76
Nature
12 November 2009: Vol. 462, pp. 189â91 DOI: 10.1038/nature08483
77
Current Biology
20 August 2009: Vol. 19. no. 18, pp. 1538â42 DOI: 10.1016/j.cub.2009.07.053
78
Science
31 October 1980: Vol. 210, pp. 555â57 DOI: 10.1126/science.7423208
79
Nature
4 February 2010: Vol. 463, pp. 657â61 DOI: 10.1038/nature08704
80
British Journal of Psychiatry
2010: Vol. 196, pp. 126â32 DOI: 10.1192/bjp.bp.109.068635
81
Applied Cognitive Psychology
December 2008: Vol. 22, no. 8, pp. 1142â62 DOI: 10.1002/acp.1427
82
Brown et. al. (Eds) (2006),
Fish Cognition and Behavior.
Wiley-Blackwell. DOI: 10.1002/9780470996058
83
Animal Learning & Behavior
2001: Vol. 29, pp. 336â53
84
www.dailyrecord.co.uk/news/uk-world-news/2008/02/02/pavlovexperiment-shows-fish-are-not-forgetful-86908-20306570/
85
Behavioral Ecology
2009: Vol. 20, no. 2, pp. 238â44 DOI: 10.1093/beheco/arp016
86
Current Biology
6 August 2009: Vol. 19, no. 16, pp. 1410â14 DOI: 10.1016/j.cub.2009.07.033
87
Nature
22 February 2007: Vol. 445, pp. 919â21 DOI: 10.1038/nature05575
88
Science
9 August 2002: Vol. 297, no. 5583, p. 981 DOI: 10.1126/science.1073433
89
PLoS Biology
August 2008: Vol. 6, no. 8, e202 DOI: 10.1371/journal.pbio.0060202
90
PNAS
2 June 2009: Vol. 106, no. 22, pp. 8959â62 DOI: 10.1073/pnas.0811422106
91
Science
20 March 2009: Vol. 323, no. 5921, pp. 1617â19 DOI: 10.1126/science.1166632
92
Journal of Experimental Biology
1 July 2009: Vol. 212, no. 13, pp. 2016â22 DOI: 10.1242/jeb.033977
93
PLoS ONE
November 2009: Vol. 4, no. 11, e7783
94
Science
12 March 2010: Vol. 327, no. 5971, pp. 1369â72 DOI: 10.1126/science.1186290
95
Science
13 April 2007: Vol. 316, no. 5822, pp. 277â80 DOI: 10.1126/science.1138709
96
PNAS
22 April 2008: Vol. 105, no. 16, pp. 6167â72 DOI: 10.1073/pnas.0704025105
97
Epidemiology and Infection
March 2010: Vol. 138, no. 3, pp. 409â14
98
www.pnas.org/content/early/2010/03/01/1000162107
DOI: 10.1073/pnas.1000162107